Human (Homo sapiens, GRCh37) and Marmoset (Callithrix jacchus, C_jacchus3.2.1) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl release 62. Human was used as the reference species. After running LastZ , the raw LastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsGap open penalty (O) | 400 |
Gap extend penalty (E) | 30 |
HSP threshold (K) | 3000 |
Threshold for gapped extension (L) | 2200 |
Threshold for alignments between gapped alignment blocks (H) | 2000 |
Masking count (M) | 50 |
Seed and Transition value (T) | 1 |
Scoring matrix (Q) | Default |
Number of alignment blocks: 1793472
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Human | ![]() |
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1,853,950,397 out of 3,098,825,702 | 34,624,170 out of 35,483,623 | |
Marmoset | ![]() |
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1,759,787,925 out of 2,914,958,544 | 31,596,999 out of 33,607,040 |