C.intestinalis vs C.savignyi BlastZ alignments

C.intestinalis (Ciona intestinalis, JGI2) and C.savignyi(Ciona savignyi, CSAV2.0) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 39. C.intestinalis was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available

Results

Number of alignment blocks: 146857

Genome coverage(bp) Coding exon coverage (bp)
C.intestinalis
41,743,223 out of 173,499,994 13,959,724 out of 16,722,294
C.savignyi
33,661,961 out of 176,989,013 10,543,174 out of 13,806,906