Human (Homo sapiens, GRCh37) and Pika(Ochotona princeps, pika) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 55. Human was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsNumber of alignment blocks: 1430719
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Human | ![]() |
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859,962,787 out of 3,098,825,702 | 30,529,965 out of 35,483,623 | |
Pika | ![]() |
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778,425,106 out of 4,294,967,295 | 20,134,012 out of 26,499,928 |