Tetraodon vs X.tropicalis Translated Blat alignments

Tetraodon (Tetraodon nigroviridis, TETRAODON8) and X.tropicalis (Xenopus tropicalis, JGI_4.2) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64) in Ensembl release 62. Tetraodon was used as the reference species. After running Translated Blat , the raw Translated Blat alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

Minimum score (minScore) 30
Database type (t) dnax
Query type (q) dnax
Mask out repeats (mask) lower
Mask out repeats on query (qmask) lower

Results

Number of alignment blocks: 160092

Genome coverage(bp) Coding exon coverage (bp)
Tetraodon
18,812,855 out of 358,618,246 15,706,036 out of 30,080,167
X.tropicalis
13,407,279 out of 1,511,717,716 11,317,466 out of 30,481,746