Human (Homo sapiens, GRCh37) and Microbat (Myotis lucifugus, Myoluc2.0) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl release 63. Human was used as the reference species. After running LastZ , the raw LastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsGap open penalty (O) | 400 |
Gap extend penalty (E) | 30 |
HSP threshold (K) | 3000 |
Threshold for gapped extension (L) | 2200 |
Threshold for alignments between gapped alignment blocks (H) | 2000 |
Masking count (M) | 50 |
Seed and Transition value (T) | 1 |
Scoring matrix (Q) | Default |
Number of alignment blocks: 1815112
Genome coverage(bp) | Coding exon coverage (bp) | |
---|---|---|
Human | ![]() |
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1,200,332,193 out of 3,098,825,702 | 32,721,373 out of 35,483,623 | |
Microbat | ![]() |
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1,117,054,385 out of 2,034,575,300 | 27,544,809 out of 30,512,546 |