Back to: ← Installing the code components
If you review the Site Structure part of this document, you will recall that the site is based around a single server-root directory. The Ensembl, BioPerl and BioMart modules are all installed into this directory. Choose a suitable location, and create your server-root directory. For the purposes of illustration, we will use /usr/local/ensembl. When following these instructions, replace /usr/local/ensembl with your chosen server-root.
cd /usr/local/ensembl
$ cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/ensembl login Logging in to :pserver:cvsuser@cvs.sanger.ac.uk:2401/cvsroot/ensembl CVS password: CVSUSER
$ cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/ensembl co -r branch-ensembl-[[SPECIESDEFS::ENSEMBL_VERSION]] ensembl-api ensembl-website
A listing of your server-root should now look something like:
apache2/ conf/ ensembl/ |
ensembl-compara/ ensembl-draw/ ensembl-external/ |
ensembl-funcgen/ ensembl-variation/ htdocs/ |
modules/ perl/ public-plugins/ |
utils/ |
N.B. You can also view the Ensembl CVS repository in your web browser.
If you haven't already done so, log into the Sanger CVS server as per the instructions above.
Check the BioMart code out of CVS (downloads the code from the Sanger CVS server onto your local machine):
$ cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/biomart co -r release-0_6 biomart-perl
More information on tweaking and configuring BioMart to work within the Ensembl website is available; for general instructions on installing biomart (including creating the cached configuration file and templates) see the biomart website.
cvs -d :pserver:cvs@cvs.open-bio.org:/home/repository/bioperl login
cvs -d :pserver:cvs@cvs.open-bio.org:/home/repository/bioperl \ co bioperl-live
A listing of your server-root should now look something like:
apache2/ bioperl-live/ biomart-perl/ |
conf/ ensembl/ ensembl-compara/ |
ensembl-draw/ ensembl-external/ ensembl-variation/ |
htdocs/ modules/ perl/ |
public-plugins/ utils/ |
You should now have all the Ensembl website code and data installed and ready to configure.
Back to: ← Installing the code components