RNAlib-2.3.1
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A breadth-first search heuristic for optimal direct folding paths. More...
Go to the source code of this file.
Data Structures | |
struct | vrna_path_s |
An element of a refolding path list. More... | |
Typedefs | |
typedef struct vrna_path_s | vrna_path_t |
Typename for the refolding path data structure vrna_path_s. | |
typedef struct vrna_path_s | path_t |
Old typename of vrna_path_s. More... | |
Functions | |
int | vrna_path_findpath_saddle (vrna_fold_compound_t *vc, const char *struc1, const char *struc2, int max) |
Find energy of a saddle point between 2 structures (search only direct path) More... | |
vrna_path_t * | vrna_path_findpath (vrna_fold_compound_t *vc, const char *s1, const char *s2, int maxkeep) |
Find refolding path between 2 structures (search only direct path) More... | |
int | find_saddle (const char *seq, const char *struc1, const char *struc2, int max) |
Find energy of a saddle point between 2 structures (search only direct path) More... | |
void | free_path (vrna_path_t *path) |
Free memory allocated by get_path() function. More... | |
vrna_path_t * | get_path (const char *seq, const char *s1, const char *s2, int maxkeep) |
Find refolding path between 2 structures (search only direct path) More... | |
A breadth-first search heuristic for optimal direct folding paths.