Source: biomaj
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <olivier.sallou@irisa.fr>
DM-Upload-Allowed: yes
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biomaj/trunk/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/?rev=0&sc=0
Homepage: http://biomaj.genouest.org
Build-Depends: debhelper (>= 7.1)
Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib,
 liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
 libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java, 
 libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, junit4, libjdepend-java,
 javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
 libjets3t-java
Standards-Version: 3.9.2

Package: biomaj
Architecture: all
Depends: ${misc:Depends}, ${java:Depends},
 openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf, 
 libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
 libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2),
 liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
 libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
 libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl
Suggests: mysql-community-server-5.0, ncbi-tools-bin, blast2
Description: Biological banks updater
 BioMAJ downloads remote data banks, check their status and apply transformation
 workflows, with consistent state,to provide ready-to-use data to biologists and
 bioinformaticians. For example, it can transform original fasta files to blast 
 indexes. It is very flexible and post-processes can be extended very easily.

Package: biomaj-properties
Architecture: all
Depends: ${misc:Depends}
Description: bank properties file examples
 This package contains a set of bank properties that can be used as
 examples for biomaj. It contains many existing banks descriptions
 with or without workflows to transform data.  Some files may required
 additional programs for post processes (blast..).
